After seven wonderful years at the Broad Institute (2016-2023), I have started a new exciting career journey in Madison, WI. Our research group is now at the Morgridge Institute for Research and the University of Wisconsin—Madison. Learn more: https://morgridge.org/research/labs/caicedo/
DeepProfiler is a set of tools that allow you to use deep learning and representation learning for extracting phenotypic information from microscopy images of cells.
Links to repositories:
Software: https://github.com/cytomining/DeepProfiler
Configuration and downstream analysis notebooks: https://github.com/broadinstitute/DeepProfilerExperiments