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Caicedo J, Singh S, Carpenter A. Applications in image-based profiling of perturbations. Current Opinion in Biotechnology. 2016;39:134–142.

Caicedo JC, Arevalo J, Piccioni F, Bray M-A, Hartland CL, Wu X, Brooks AN, Berger AH, Boehm JS, Carpenter A, et al. Cell Painting predicts impact of lung cancer variants. Molecular Biology of the Cell. 2022;(6).

Caicedo J, Cooper S, Heigwer F, Warchal S, Qiu P, Molnar C, Vasilevich A, Barry J, Bansal HS, Kraus O, et al. Data-analysis strategies for image-based cell profiling. Nature Methods. 2017;14(9):849–863.

Bhate SS, Seigal A, Caicedo J. Deciphering causal genomic templates of complex molecular phenotypes. bioRxiv. 2022.